Tag Archives: Phenotype

Early renal abnormalities in autosomal dominant polycystic kidney disease

Meijer E, Rook M, Tent H, Navis G, van der Jagt EJ, de Jong PE, Gansevoort RT. Early renal abnormalities in autosomal dominant polycystic kidney disease. Clin J Am Soc Nephrol. June 2010;5(6):1091-1098. Full Text – Open Access Publication Date June 2010 How Analyze was Used “Renal volume was measured on T2 weighted coronal images….

Brain phenotypes in two FGFR2 mouse models for Apert syndrome

Aldridge K, Hill CA, Austin JR, Percival C, Martinez-Abadias N, Neuberger T, Wang Y, Jabs EW, Richtsmeier JT. Brain phenotypes in two FGFR2 mouse models for Apert syndrome. Dev Dyn. March 2010;239(3):987-997. Full Text – Open Access Publication Date March 2010 How Analyze was Used “The 3D coordinate locations of neuroanatomical landmarks were recorded for…

Establishment and characterization of patient tumor-derived head and neck squamous cell carcinoma xenografts

Seshadri M, Merzianu M, Tang H, Rigual NR, Sullivan M, Loree TR, Popat SR, Repasky EA, Hylander BL. Establishment and characterization of patient tumor-derived head and neck squamous cell carcinoma xenografts. Cancer Biol Ther. December 2009;8(23):2275-2283. Full Text – Open Access Publication Date December 2009 How Analyze was Used “Vessel lumen size measurements were performed…

Combined magnetic resonance imaging and positron emission tomography brain imaging in behavioural variant frontotemporal degeneration: refining the clinical phenotype

Kipps CM, Hodges JR, Fryer TD, Nestor PJ. Combined magnetic resonance imaging and positron emission tomography brain imaging in behavioural variant frontotemporal degeneration: refining the clinical phenotype. Brain. September 2009;132(Pt 9):2566-2578. Full Text – Open Access Publication Date September 2009 How Analyze was Used “All MRI scans were resliced using cubic spline interpolation to an…

A comparison of covariance structure in wild and laboratory muroid crania

Jamniczky HA, Hallgrimsson B. A comparison of covariance structure in wild and laboratory muroid crania. Evolution. June 2009;63(6):1540-1556. Publication Date June 2009 How Analyze was Used “Fifty-two three-dimensional landmarks were originally collected from these images using Analyze 5.0.” Keywords Animals Biological Evolution Cephalometry/methods Genetic Variation Mice Mice, Inbred Strains/anatomy & histology Mutation Phenotype Skull/anatomy &…

Mitochondrial DNA and gastrointestinal motor and sensory functions in health and functional gastrointestinal disorders

Camilleri M, Carlson P, Zinsmeister AR, McKinzie S, Busciglio I, Burton D, Zaki EA, Boles RG. Mitochondrial DNA and gastrointestinal motor and sensory functions in health and functional gastrointestinal disorders. Am J Physiol Gastrointest Liver Physiol. March 2009;296(3):G510-516. Full Text – Open Access Publication Date March 2009 How Analyze was Used “The stomach was identified…

Use of magnetic resonance imaging for anatomical phenotyping of the R6/2 mouse model of Huntington’s disease

Sawiak SJ, Wood NI, Williams GB, Morton AJ, Carpenter TA. Use of magnetic resonance imaging for anatomical phenotyping of the R6/2 mouse model of Huntington’s disease. Neurobiol Dis. January 2009;33(1):12-19. Publication Date January 2009 How Analyze was Used “Analyze 7.5 … was used to delineate each structure manually, defining for each a region of interest…

Short-faced mice and developmental interactions between the brain and the face

Boughner JC, Wat S, Diewert VM, Young NM, Browder LW, Hallgrimsson B. Short-faced mice and developmental interactions between the brain and the face. J Anat. December 2008;213(6):646-662. Full Text – Open Access Publication Date December 2008 How Analyze was Used “The CT data were then imported into Analyze 5.0 software … for landmarking.” Keywords Animals…

Reproducible MRI measurement of adipose tissue volumes in genetic and dietary rodent obesity models

Johnson DH, Flask CA, Ernsberger PR, Wong WCK, Wilson DL. Reproducible MRI measurement of adipose tissue volumes in genetic and dietary rodent obesity models. J Magn Reson Imaging. October 2008;28(4):915-927. Full Text – Open Access Publication Date October 2008 How Analyze was Used “The only manual input was tracing the abdominal cavity in all slices…

Mn enhancement and respiratory gating for in utero MRI of the embryonic mouse central nervous system

Deans AE, Wadghiri YZ, Berrios-Otero CA, Turnbull DH. Mn enhancement and respiratory gating for in utero MRI of the embryonic mouse central nervous system. Magn Reson Med. June 2008;59(6):1320-1328. Full Text – Open Access Publication Date June 2008 How Analyze was Used “Image analysis and semiautomated segmentation were performed using Analyze (AnalyzeDirect, Overland Park, KS,…