Johnson HL, Willenbring RC, Jin F, Manhart WA, LaFrance SJ, Pirko I, Johnson AJ. Perforin competent CD8 T cells are sufficient to cause immune-mediated blood-brain barrier disruption. PLoS One. October 2014;9(10):e111401. Full Text – Open Access Publication Date October 2014 How Analyze was Used “Analyze 11.0 software … was used to quantify the 3D volume…
Gao J, Du P, O’Grady G, Archer R, Farrugia G, Gibbons SJ, Cheng LK. Numerical metrics for automated quantification of interstitial cell of Cajal network structural properties. J R Soc Interface. September 2013;10(86):20130421. Full Text – Open Access Publication Date September 2013 How Analyze was Used “Confocal image slices were sequentially taken throughout the transmural…
Johnson HL, Chen Y, Jin F, Hanson LM, Gamez JD, Pirko I, Johnson AJ. CD8 T cell-initiated blood-brain barrier disruption is independent of neutrophil support. J Immunol. August 2012;189(4):1937-1945. Full Text – Open Access Publication Date August 2012 How Analyze was Used “The 3D volume of vascular permeability was quantified using Analyze 10 software.” Keywords…
Graf BW, Boppart SA. Imaging and analysis of three-dimensional cell culture models. Methods Mol Biol. January 2010;591:211-227. Full Text – Open Access Publication Date January 2010 How Analyze was Used “Using the Analyze software, en face planes are computationally extracted from the 3D data to observe the structure (see Fig. 13.6a) and functional (see Fig….
Waring IV G, Durrie D, Sutphin Jr J, Stahl J. Three dimensional endoscopic confocal corneal fly through video for qualitative analysis of the cornea following acufocustm corneal inlay. Invest Ophthalmol Vis Sci. May 2008;49(13):2260-2260. Publication Date May 2008 How Analyze was Used “A three dimensional endoscopic confocal corneal ‘fly through’ video was created with Analyze…
Goggi JL, Sardini A, Egerton A, Strange PG, Grasby PM. Agonist-dependent internalization of D2 receptors: imaging quantification by confocal microscopy. Synapse. April 2007;61(4):231-241. Publication Date April 2007 How Analyze was Used “Images were then analyzed using Analyze 6.0 software (AnalyzeDirect, Lenexa, KS). Images were smoothed by using a 2 x 2 x 2 smoothing kernel…
Tan W, Vinegoni C, Norman JJ, Desai TA, Boppart SA. Imaging cellular responses to mechanical stimuli within three-dimensional tissue constructs. Microsc Res Tech. April 2007;70(4):361-371. Publication Date April 2007 How Analyze was Used “Three-dimensional visualization of the engineered tissue constructs was achieved by volume rendering the image stacks of OCM and MPM data using 3D…
Sagstetter AM, Camp JJ, Lurken MS, Szurszewski JH, Farrugia G, Gibbons SJ, Robb RA. Computer aided classification of cell nuclei in the gastrointestinal tract by volume and principal axis. Proc Soc Photo Opt Instrum Eng. March 2007;6514:65140e. Full Text – Open Access Publication Date March 2007 How Analyze was Used “The objective of the present…
Garg I, Camp JJ, McBane R, Wysokinski W, Robb RA. Registration, segmentation, and visualization of confocal microscopy images of arterial thrombus. Paper presented at: Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display, February 2004; San Diego, CA, US. Publication Date February 2004 How Analyze was Used “Adjacent slices were registered by a combination of manual…
Ermilov LG, Miller SM, Schmalz PF, Hanani M, Lennon VA, Szurszewski JH. Morphological characteristics and immunohistochemical detection of nicotinic acetylcholine receptors on intestinofugal afferent neurones in guinea-pig colon. Neurogastroenterol Motil. June 2003;15(3):289-298. Full Text – Open Access Publication Date June 2003 How Analyze was Used “Images were processed using ANALYZETMÂ software … running on a Sparc…
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