Tag Archives: Segmentation

NS-HGlio: A Generalizable and Repeatable HGG Segmentation and Volumetric measurement AI Algorithm for the Longitudinal MRI Assessment to Inform RANO in Trials and Clinics

Aly H Abayazeed et al. NS-HGlio: A Generalizable and Repeatable HGG Segmentation and Volumetric measurement AI Algorithm for the Longitudinal MRI Assessment to Inform RANO in Trials and Clinics Journal of Neuro-Oncology Advances. Publication Date December 21, 2022 How Analyze was Used “For the training and internal validation datasets, six neuroradiologists each with > 6…

A fully automated deep learning pipeline for micro-CT-imaging-based densitometry of lung fibrosis murine models

Elena Vincenzi et al. A fully automated deep learning pipeline for micro-CT-imaging-based densitometry of lung fibrosis murine models Respiratory Research. Publication Date November 11, 2022 How Analyze was Used “Each µCT volume was segmented semi-automatically by trained operators by means of Analyze software (Analyze 12.0), according to Chiesi Farmaceutici S.p.A. well-established and tested protocol. Since…

Automated Segmentation of the Median Nerve in the Carpal Tunnel using U-Net

Raymond T.Festen et al. Automated Segmentation of the Median Nerve in the Carpal Tunnel using U-Net Ultrasound in Medicine & Biology. Publication Date April 27, 2021 How Analyze was Used “Manual analysis of the DICOM images was done using Analyze Version 12.0, Biomedical Imaging Resource, by two experienced researchers who demarcated the median nerve” Keywords…

Automatic segmentation, classification and follow‐up of optic pathway gliomas using deep learning and fuzzy c‐means clustering based on MRI

Moran Artzi et al. Automatic segmentation, classification and follow‐up of optic pathway gliomas using deep learning and fuzzy c‐means clustering based on MRI Medical Physics. Publication Date September 23, 2020 How Analyze was Used “The manual segmentation was performed at slice (2D) level using commercial software (AnalyzeDirect 11.0).” Keywords Deep learning, Fuzzy c‐means clustering, Segmentation,…

Automatization and improvement of μCT analysis for murine lung disease models using a deep learning approach

Gerald Birk et al. Automatization and improvement of μCT analysis for murine lung disease models using a deep learning approach. Respiratory Research. Publication Date May 24, 2020 How Analyze was Used “Threshold-based, semi-automated segmentation and generation of lung densitometric data were done using Analyze 12 (AnalyzeDirect, Inc.).” Keywords Lung disease models, Deep learning, Micro-CT, Computational…

Accuracy of automated amygdala MRI segmentation approaches in Huntington’s disease in the IMAGE-HD cohort

Bonnie Alexander et al. Accuracy of automated amygdala MRI segmentation approaches in Huntington’s disease in the IMAGE-HD cohort. Human Brain Mapping. Publication Date February 7, 2020 How Analyze was Used “Manual tracing of amygdala was performed by L.A. using Analyze 12.0 (AnalyzeDirect, Overland Park, KS) according to an existing protocol (Velakoulis et al., 2006) while…

Segmentation errors and intertest reliability in automated and manually traced hippocampal volumes

Benjamin H. Brinkmann et al. Segmentation errors and intertest reliability in automated and manually traced hippocampal volumes. Annals of Clinical and Translational Neurology. Publication Date September 6, 2019 How Analyze was Used “Manual hippocampus segmentations were performed by experienced 3D lab technologists using a dedicated hippocampal volume tracing program (Analyze, Biomedical Imaging Resource, Rochester MN)….

Developing FE Human Models From Medical Images

Anil Kalra. Developing FE Human Models From Medical Images. Basic Finite Element Method as Applied to Injury Biomechanics. Publication Date September 29 2017 How Analyze was Used “Various free as well as commercially available software tools are available to read different file formats…These tools are becoming very popular because they process the data quickly and…

Supervised segmentation of polycystic kidneys: a new application for stereology data

Warner JD, Irazabal MV, Krishnamurthi G, King BF, Torres VE, Erickson BJ. Supervised segmentation of polycystic kidneys: a new application for stereology data. J Digit Imaging. August 2014;27(4):514-519. Publication Date August 2014 How Analyze was Used “All planimetry data was collected using the Analyze© 11 software package.” Keywords 3D Segmentation Biomedical Image Analysis Boundary Extraction…

Differentiation of calcified regions and iron deposits in the ageing brain on conventional structural MR images

Valdés Hernández MC, Glatz A, Kiker AJ, Dickie DA, Aribisala BS, Royle NA, Muñoz Maniega S, Bastin ME, Deary IJ, Wardlaw JM. Differentiation of calcified regions and iron deposits in the ageing brain on conventional structural MR images. J Magn Reson Imaging. August 2014;40(2):324-333. Publication Date August 2014 How Analyze was Used “After registering the…