Tag Archives: Mice

Automatic segmentation of intra-abdominal and subcutaneous adipose tissue in 3D whole mouse MRI

Ranefall P, Bidar AW, Hockings PD. Automatic segmentation of intra-abdominal and subcutaneous adipose tissue in 3D whole mouse MRI. J Magn Reson Imaging. September 2009;30(3):554-560. Publication Date September 2009 How Analyze was Used “All the 3D images have been segmented manually using Analyze 7.0 … by the same operator.” Keywords Algorithms Animals Imaging, Three-Dimensional/methods Intra-Abdominal…

A novel model-gel-tissue assay analysis for comparing tumor elastic properties to collagen content

Barnes SL, Young PP, Miga MI. A novel model-gel-tissue assay analysis for comparing tumor elastic properties to collagen content. Biomech Model Mechanobiol. August 2009;8(4):337-343. Publication Date August 2009 How Analyze was Used “Image segmentation of the CT images was performed using AnalyzeAVW.” Keywords Animals Collagen/chemistry/metabolism Compressive Strength Elasticity Finite Element Analysis Gels Hydrolysis Immunohistochemistry/methods Mammary…

MRI-based characterization of vascular disruption by 5,6-dimethylxanthenone-acetic acid in gliomas

Seshadri M, Ciesielski MJ. MRI-based characterization of vascular disruption by 5,6-dimethylxanthenone-acetic acid in gliomas. J Cereb Blood Flow Metab. August 2009;29(8):1373-1382. Full Text – Open Access Publication Date August 2009 How Analyze was Used “After image acquisition, raw image sets were transferred to a processing workstation and converted into Analyze format (AnalyzeDirect, Version 8.0, Overland…

The chimpanzee brain shows human-like perisylvian asymmetries in white matter

Cantalupo C, Oliver J, Smith J, Nir T, Taglialatela JP, Hopkins WD. The chimpanzee brain shows human-like perisylvian asymmetries in white matter. Eur J Neurosci. August 2009;30(3):431-438. Full Text – Open Access Publication Date August 2009 How Analyze was Used “The archived MRI data were transferred to a PC running Analyze 7.0 … software for…

Prostate-specific Klf6 inactivation impairs anterior prostate branching morphogenesis through increased activation of the Shh pathway

Leow CC, Wang BE, Ross J, Chan SM, Zha J, Carano RAD, Frantz G, Shen MM, de Sauvage FJ, Gao WQ. Prostate-specific Klf6 inactivation impairs anterior prostate branching morphogenesis through increased activation of the Shh pathway. J Biol Chem. July 2009;284(31):21057-21065. Full Text – Open Access Publication Date July 2009 How Analyze was Used “Micro-CT…

Deep gray matter T2 hypointensity correlates with disability in a murine model of MS

Pirko I, Johnson AJ, Lohrey AK, Chen Y, Ying J. Deep gray matter T2 hypointensity correlates with disability in a murine model of MS. J Neurol Sci. July 2009;282(1-2):34-38. Full Text – Open Access Publication Date July 2009 How Analyze was Used “All 3D images were co-registered to a base image using a 6 degree…

In vivo near-infrared fluorescence imaging of matrix metalloproteinase activity after cerebral ischemia

Klohs J, Baeva N, Steinbrink J, Bourayou R, Boettcher C, Royl G, Megow D, Dirnagl U, Priller J, Wunder A. In vivo near-infrared fluorescence imaging of matrix metalloproteinase activity after cerebral ischemia. J Cereb Blood Flow Metab. July 2009;29(7):1284-1292. Full Text – Open Access Publication Date July 2009 How Analyze was Used “The hyperintense ischemic…

PET of glial metabolism using 2-18F-fluoroacetate

Marik J, Ogasawara A, Martin-McNulty B, Ross J, Flores JE, Gill HS, Tinianow JN, Vanderbilt AN, Nishimura M, Peale F, Pastuskovas C, Greve JM, van Bruggen N, Williams SP. PET of glial metabolism using 2-18F-fluoroacetate. J Nucl Med. June 2009;50(6):982-990. Full Text – Open Access Publication Date June 2009 How Analyze was Used “The PET…

A comparison of covariance structure in wild and laboratory muroid crania

Jamniczky HA, Hallgrimsson B. A comparison of covariance structure in wild and laboratory muroid crania. Evolution. June 2009;63(6):1540-1556. Publication Date June 2009 How Analyze was Used “Fifty-two three-dimensional landmarks were originally collected from these images using Analyze 5.0.” Keywords Animals Biological Evolution Cephalometry/methods Genetic Variation Mice Mice, Inbred Strains/anatomy & histology Mutation Phenotype Skull/anatomy &…

Near-infrared fluorescence imaging with fluorescently labeled albumin: a novel method for non-invasive optical imaging of blood-brain barrier impairment after focal cerebral ischemia in mice

Klohs J, Steinbrink J, Bourayou R, Mueller S, Cordell R, Licha K, Schirner M, Dirnagl U, Lindauer U, Wunder A. Near-infrared fluorescence imaging with fluorescently labeled albumin: a novel method for non-invasive optical imaging of blood-brain barrier impairment after focal cerebral ischemia in mice. J Neurosci Methods. May 2009;180(1):126-132. Publication Date May 2009 How Analyze…