Tag Archives: Brain/anatomy & histology

Stereotactic neurosurgical planning, recording, and visualization for deep brain stimulation in non-human primates

Miocinovic S, Zhang J, Xu W, Russo GS, Vitek JL, McIntyre CC. Stereotactic neurosurgical planning, recording, and visualization for deep brain stimulation in non-human primates. J Neurosci Methods. May 2007;162(1-2):32-41. Full Text – Open Access Publication Date May 2007 How Analyze was Used “The MRI and CT were co-registered in Analyze 6.0 (AnalyzeDirect, Lenexa, KS)…

Postnatal dexamethasone therapy and cerebral tissue volumes in extremely low birth weight infants

Parikh NA, Lasky RE, Kennedy KA, Moya FR, Hochhauser L, Romo S, Tyson JE. Postnatal dexamethasone therapy and cerebral tissue volumes in extremely low birth weight infants. Pediatrics. February 2007;119(2):265-272. Publication Date February 2007 How Analyze was Used “Coronal T2-weighted MRI scans were imported into Analyze 4.0 software … for manual and semiautomated whole-brain segmentation…

Dorsolateral prefrontal cortex and anterior cingulate cortex white matter alterations in late-life depression

Bae JN, MacFall JR, Krishnan KRR, Payne ME, Steffens DC, Taylor WD. Dorsolateral prefrontal cortex and anterior cingulate cortex white matter alterations in late-life depression. Biol Psychiatry. December 2006;60(12):1356-1363. Publication Date December 2006 How Analyze was Used “Fractional anisotropy (Basser and Pierpaoli 1996) and ADC images were then calculated and processed on SUN workstations using…

White matter integrity in kleptomania: a pilot study

Grant JE, Correia S, Brennan-Krohn T. White matter integrity in kleptomania: a pilot study. Psychiatry Res. October 2006;147(2-3):233-237. Full Text – Open Access Publication Date October 2006 How Analyze was Used “Experienced raters (SC and TBK), blind to group assignment, analyzed images using Analyze AVW software (v. 5.0 and 6.0) (Robb and Hanson, 1990). The…

Prefrontal white matter volume is disproportionately larger in humans than in other primates

Schoenemann PT, Sheehan MJ, Glotzer LD. Prefrontal white matter volume is disproportionately larger in humans than in other primates. Nat Neurosci. February 2005;8(2):242-252. Publication Date February 2005 How Analyze was Used “Primate scans were corrected for fluctuations in average intensity across slices (which were evident on visual inspection) using mean-based homomorphic filtering (Analyze image processing…

Basal Ganglia volumes in patients with Gilles de la Tourette syndrome

Peterson BS, Thomas P, Kane MJ, Scahill L, Zhang H, Bronen R, King RA, Leckman JF, Staib L. Basal Ganglia volumes in patients with Gilles de la Tourette syndrome. Arch Gen Psychiatry. April 2003;60(4):415-424. Full Text – Open Access Publication Date April 2003 How Analyze was Used “Morphometric analyses were performed on UNIX workstations (Sun…

Atlas-assisted localization analysis of functional images

Nowinski WL, Thirunavuukarasuu A. Atlas-assisted localization analysis of functional images. Med Image Anal. September 2001;5(3):207-220. Publication Date September 2001 How Analyze was Used “Step 1 is to load the anatomical data as TIFF or Analyze AVW format images and to check their correctness.” Keywords Anatomy, Artistic Brain/anatomy & histology Humans Image Processing, Computer-Assisted/methods Medical Illustration…

Regional brain and ventricular volumes in Tourette syndrome

Peterson BS, Staib L, Scahill L, Zhang H, Anderson C, Leckman JF, Cohen DJ, Gore JC, Albert J, Webster R. Regional brain and ventricular volumes in Tourette syndrome. Arch Gen Psychiatry. May 2001;58(5):427-440. Full Text – Open Access Publication Date May 2001 How Analyze was Used “Morphometric analyses were performed on Sun Ultra 10 workstations…

Volumes of brain structures in twins discordant for schizophrenia

Baare WF, van Oel CJ, Hulshoff Pol HE, Schnack HG, Durston S, Sitskoorn MM, Kahn RS. Volumes of brain structures in twins discordant for schizophrenia. Arch Gen Psychiatry. January 2001;58(1):33-40. Full Text – Open Access Publication Date January 2001 How Analyze was Used “Manual segmentation was performed in an anterior-posterior direction on whole-brain volumes using…

An optimized method for estimating intracranial volume from magnetic resonance images

Eritaia J, Wood SJ, Stuart GW, Bridle N, Dudgeon P, Maruff P, Velakoulis D, Pantelis C. An optimized method for estimating intracranial volume from magnetic resonance images. Magn Reson Med. December 2000;44(6):973-977. Publication Date December 2000 How Analyze was Used “The images were analyzed using ANALYZE 7.5 software.” Keywords Adolescent Adult Algorithms Analysis of Variance…