Tag Archives: Algorithms

MRI-based large deformation high dimensional mapping of the hippocampus in rats: development and validation of the technique

Hogan RE, Bouilleret V, Liu YR, Wang L, Williams JP, Jupp B, Myers D, O’Brien TJ. MRI-based large deformation high dimensional mapping of the hippocampus in rats: development and validation of the technique. J Magn Reson Imaging. May 2009;29(5):1027-1034. Publication Date May 2009 How Analyze was Used “Analyze AVW version 7.0 … was used as…

A semi-automatic image segmentation method for extraction of brain volume from in vivo mouse head magnetic resonance imaging using Constraint Level Sets

Uberti MG, Boska MD, Liu Y. A semi-automatic image segmentation method for extraction of brain volume from in vivo mouse head magnetic resonance imaging using Constraint Level Sets. J Neurosci Methods. May 2009;179(2):338-344. Full Text – Open Access Publication Date May 2009 How Analyze was Used “The SBRG algorithm in Analyze® (AnalyzeDirect, Lenexa, KS) was…

White matter hyperintensities in the forties: their prevalence and topography in an epidemiological sample aged 44-48

Wen W, Sachdev PS, Li JJ, Chen X, Anstey KJ. White matter hyperintensities in the forties: their prevalence and topography in an epidemiological sample aged 44-48. Hum Brain Mapp. April 2009;30(4):1155-1167. Publication Date April 2009 How Analyze was Used “Data were transferred to a DELL Precision 380 workstation running Windows XP® and analyzed using ANALYZE®…

Diffusion tensor imaging in glioblastoma multiforme and brain metastases: the role of p, q, L, and fractional anisotropy

Wang W, Steward CE, Desmond PM. Diffusion tensor imaging in glioblastoma multiforme and brain metastases: the role of p, q, L, and fractional anisotropy. AJNR Am J Neuroradiol. January 2009;30(1):203-208. Full Text – Open Access Publication Date January 2009 How Analyze was Used “From the DTI sequence, FA [fractional anisotropy], MD [mean diffusivity], and eigenvalue…

Reproducible MRI measurement of adipose tissue volumes in genetic and dietary rodent obesity models

Johnson DH, Flask CA, Ernsberger PR, Wong WCK, Wilson DL. Reproducible MRI measurement of adipose tissue volumes in genetic and dietary rodent obesity models. J Magn Reson Imaging. October 2008;28(4):915-927. Full Text – Open Access Publication Date October 2008 How Analyze was Used “The only manual input was tracing the abdominal cavity in all slices…

Feasibility study for image-guided kidney surgery: assessment of required intraoperative surface for accurate physical to image space registrations

Benincasa AB, Clements LW, Herrell SD, Galloway RL. Feasibility study for image-guided kidney surgery: assessment of required intraoperative surface for accurate physical to image space registrations. Med Phys. September 2008;35(9):4251-4261. Full Text – Open Access Publication Date September 2008 How Analyze was Used “Computed tomography (CT) images of both phantom orientations were acquired. The kidney…

2D/3D registration of endoscopic ultrasound to CT volume data

Hummel J, Figl M, Bax M, Bergmann H, Birkfellner W. 2D/3D registration of endoscopic ultrasound to CT volume data. Phys Med Biol. August 2008;53(16):4303-4316. Publication Date August 2008 How Analyze was Used “For all image manipulations of CT volume sets we used the AVW library.” Keywords Algorithms Artificial Intelligence Endosonography/instrumentation/methods Humans Image Enhancement/methods Image Interpretation,…

Validation of alternating Kernel mixture method: application to tissue segmentation of cortical and subcortical structures

Lee NA, Priebe CE, Miller MI, Ratnanather JT. Validation of alternating Kernel mixture method: application to tissue segmentation of cortical and subcortical structures. J Biomed Biotechnol. August 2008;2008:346129. Full Text – Open Access Publication Date August 2008 How Analyze was Used “Segmentation was done by visual inspection on contiguous sagittal slices on Analyze software [Robb…

Understanding the relationship between image quality and motion velocity in gated computed tomography: preliminary work for 4-dimensional musculoskeletal imaging

Tay SC, Primak AN, Fletcher JG, Schmidt B, An KN, McCollough CH. Understanding the relationship between image quality and motion velocity in gated computed tomography: preliminary work for 4-dimensional musculoskeletal imaging. J Comput Assist Tomogr. July 2008;32(4):634-639. Full Text – Open Access Publication Date July 2008 How Analyze was Used “Quantitative measurements were performed using…

Robust surface registration using salient anatomical features for image-guided liver surgery: algorithm and validation

Clements LW, Chapman WC, Dawant BM, Galloway RL, Jr., Miga MI. Robust surface registration using salient anatomical features for image-guided liver surgery: algorithm and validation. Med Phys. June 2008;35(6):2528-2540. Full Text – Open Access Publication Date June 2008 How Analyze was Used “Once imaging data were acquired, the sphere points were localized in the LRS…