Tag Archives: Brain/anatomy & histology/physiology

Magnetic resonance imaging of the newborn brain: automatic segmentation of brain images into 50 anatomical regions

Gousias IS, Hammers A, Counsell SJ, Srinivasan L, Rutherford MA, Heckemann RA, Hajnal JV, Rueckert D, Edwards AD. Magnetic resonance imaging of the newborn brain: automatic segmentation of brain images into 50 anatomical regions. PLoS One. April 2013;8(4):e59990. Full Text – Open Access Publication Date April 2013 How Analyze was Used “T1-weighted images were resampled,…

Observer-independent characterization of sulcal landmarks and depth asymmetry in the central sulcus of the chimpanzee brain

Hopkins WD, Coulon O, Mangin JF. Observer-independent characterization of sulcal landmarks and depth asymmetry in the central sulcus of the chimpanzee brain. Neuroscience. December 2010;171(2):544-551. Full Text – Open Access Publication Date December 2010 How Analyze was Used “The archived MRI data were transferred to a PC running Analyze 8.1 … software for post-image processing.”…

Hemispheric connectivity and the visual-spatial divergent-thinking component of creativity

Moore DW, Bhadelia RA, Billings RL, Fulwiler C, Heilman KM, Rood KMJ, Gansler DA. Hemispheric connectivity and the visual-spatial divergent-thinking component of creativity. Brain Cogn. August 2009;70(3):267-272. Publication Date August 2009 How Analyze was Used “Regions of interest were measured using Analyze 6.0 image software …, for the CC and WMV.” Keywords Adult Brain/anatomy &…

The chimpanzee brain shows human-like perisylvian asymmetries in white matter

Cantalupo C, Oliver J, Smith J, Nir T, Taglialatela JP, Hopkins WD. The chimpanzee brain shows human-like perisylvian asymmetries in white matter. Eur J Neurosci. August 2009;30(3):431-438. Full Text – Open Access Publication Date August 2009 How Analyze was Used “The archived MRI data were transferred to a PC running Analyze 7.0 … software for…

A semi-automatic image segmentation method for extraction of brain volume from in vivo mouse head magnetic resonance imaging using Constraint Level Sets

Uberti MG, Boska MD, Liu Y. A semi-automatic image segmentation method for extraction of brain volume from in vivo mouse head magnetic resonance imaging using Constraint Level Sets. J Neurosci Methods. May 2009;179(2):338-344. Full Text – Open Access Publication Date May 2009 How Analyze was Used “The SBRG algorithm in Analyze® (AnalyzeDirect, Lenexa, KS) was…

Aging white matter and cognition: differential effects of regional variations in diffusion properties on memory, executive functions, and speed

Kennedy KM, Raz N. Aging white matter and cognition: differential effects of regional variations in diffusion properties on memory, executive functions, and speed. Neuropsychologia. February 2009;47(3):916-927. Full Text – Open Access Publication Date February 2009 How Analyze was Used “The DTI data were processed with the DTI module of Analyze software.” Keywords Adult Age Factors…

Predicting the effects of deep brain stimulation with diffusion tensor based electric field models

Butson CR, Cooper SE, Henderson JM, McIntyre CC. Predicting the effects of deep brain stimulation with diffusion tensor based electric field models. Med Image Comput Comput Assist Interv. October 2006;9(Pt 2):429-437. Publication Date October 2006 How Analyze was Used “The pre-operative and post-operative MR volumes were then co-registered with fractional anisotropy values from a DTI…

Brain mapping of deception and truth telling about an ecologically valid situation: functional MR imaging and polygraph investigation–initial experience

Mohamed FB, Faro SH, Gordon NJ, Platek SM, Ahmad H, Williams JM. Brain mapping of deception and truth telling about an ecologically valid situation: functional MR imaging and polygraph investigation–initial experience. Radiology. February 2006;238(2):679-688. Full Text – Open Access Publication Date February 2006 How Analyze was Used “Images were converted from the Vision (Siemens) format…

Semiautomatic brain region extraction: a method of parcellating brain regions from structural magnetic resonance images

Dade LA, Gao FQ, Kovacevic N, Roy P, Rockel C, O’Toole CM, Lobaugh NJ, Feinstein A, Levine B, Black SE. Semiautomatic brain region extraction: a method of parcellating brain regions from structural magnetic resonance images. Neuroimage. August 2004;22(4):1492-1502. Publication Date August 2004 How Analyze was Used “Manual AC–PC alignment and SABRE landmark identification and tracing…

Co-registration of cortical magnetic stimulation and functional magnetic resonance imaging

Bastings EP, Gage HD, Greenberg JP, Hammond G, Hernandez L, Santago P, Hamilton CA, Moody DM, Singh KD, Ricci PE, Pons TP, Good DC. Co-registration of cortical magnetic stimulation and functional magnetic resonance imaging. Neuroreport. June 1998;9(9):1941-1946. Publication Date June 1998 How Analyze was Used “To determine the locus of TMS activation on the brain…