Tag Archives: Algorithms

TWave: high-order analysis of functional MRI

Barnathan M, Megalooikonomou V, Faloutsos C, Faro S, Mohamed FB. TWave: high-order analysis of functional MRI. Neuroimage. September 2011;58(2):537-548. Full Text – Open Access Publication Date September 2011 How Analyze was Used “Images were converted from the DICOM format into the ANALYZE (AnalyzeDirect, Inc., Lenexa, KY) format adopted in the SPM package.” Keywords Adult Algorithms…

Automatic generation of boundary conditions using demons nonrigid image registration for use in 3-D modality-independent elastography

Pheiffer TS, Ou JJ, Ong RE, Miga MI. Automatic generation of boundary conditions using demons nonrigid image registration for use in 3-D modality-independent elastography. IEEE Trans Biomed Eng. September 2011;58(9):2607-2616. Full Text – Open Access Publication Date September 2011 How Analyze was Used “The surface of each tissue volume was segmented from the surrounding structures…

Computation of hemodynamics in the left coronary artery with variable angulations

Chaichana T, Sun Z, Jewkes J. Computation of hemodynamics in the left coronary artery with variable angulations. J Biomech. July 2011;44(10):1869-1878. Publication Date July 2011 How Analyze was Used “Original DICOM (digital imaging and communication in medicine) data was transferred to a separate workstation equipped with Analyze version 7.0 (AnalyzeDirect, Inc., Lenexa, KS, USA) for…

Localization of ictal onset zones in Lennox-Gastaut syndrome using directional connectivity analysis of intracranial electroencephalography

Jung YJ, Kang HC, Choi KO, Lee JS, Kim DS, Cho JH, Kim SH, Im CH, Kim HD. Localization of ictal onset zones in Lennox-Gastaut syndrome using directional connectivity analysis of intracranial electroencephalography. Seizure. July 2011;20(6):449-457. Full Text – Open Access Publication Date July 2011 How Analyze was Used “SISCOM images were constructed using a…

Mechanistic insight into the physiological relevance of helical blood flow in the human aorta: an in vivo study

Morbiducci U, Ponzini R, Rizzo G, Cadioli M, Esposito A, Montevecchi FM, Redaelli A. Mechanistic insight into the physiological relevance of helical blood flow in the human aorta: an in vivo study. Biomech Model Mechanobiol. June 2011;10(3):339-355. Publication Date June 2011 How Analyze was Used “The procedure for the extraction of the aortic shape [includes]…

On the use of a spin-echo based double inversion recovery acquisition for the measurement of cortical brain thickness

Nam Y, Kim EY, Kim DH. On the use of a spin-echo based double inversion recovery acquisition for the measurement of cortical brain thickness. J Magn Reson Imaging. May 2011;33(5):1218-1223. Publication Date May 2011 How Analyze was Used “[The] segmentation step was done using the Analyze 9.0 software (AnalyzeDirect, inc). Then, the signal intensities of…

Validation of an elastic registration technique to estimate anatomical lung modification in non-small-cell lung cancer tomotherapy

Faggiano E, Cattaneo GM, Ciavarro C, Dell’Oca I, Persano D, Calandrino R, Rizzo G. Validation of an elastic registration technique to estimate anatomical lung modification in non-small-cell lung cancer tomotherapy. Radiat Oncol. April 2011;6:31. Full Text – Open Access Publication Date April 2011 How Analyze was Used “A region growing algorithm, implemented in a commercial…

Validation for 2D/3D registration 1: a new gold standard data set

Pawiro SA, Markelj P, Pernuš F, Gendrin C, Figl M, Weber C, Kainberger F, Nöbauer-Huhmann I, Bergmeister H, Stock M, Georg D, Bergmann H, Birkfellner W. Validation for 2D/3D registration 1: a new gold standard data set. Med Phys. March 2011;38(3):1481-1490. Full Text – Open Access Publication Date March 2011 How Analyze was Used “The…

Reliability of two techniques for assessing cerebral iron deposits with structural magnetic resonance imaging

Valdés Hernández MC, Jeong TH, Murray C, Bastin ME, Chappell FM, Deary IJ, Wardlaw JM. Reliability of two techniques for assessing cerebral iron deposits with structural magnetic resonance imaging. J Magn Reson Imaging. January 2011;33(1):54-61. Publication Date January 2011 How Analyze was Used “A brain mask was then obtained from the T2*W data using the…

Automated three-dimensional quantification of noncalcified coronary plaque from coronary CT angiography: comparison with intravascular US

Dey D, Schepis T, Marwan M, Slomka PJ, Berman DS, Achenbach S. Automated three-dimensional quantification of noncalcified coronary plaque from coronary CT angiography: comparison with intravascular US. Radiology. November 2010;257(2):516-522. Full Text – Open Access Publication Date November 2010 How Analyze was Used “Clouse et al [2008] described a “voxel analysis” technique by using software…